Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2274 domain-containing protein | SGRAN_RS15945 | Not Available | Negative | 3484777 - 3484998 | 8221.17 |
| trbi/virb10 family protein | SGRAN_RS15950 | Not Available | Negative | 3484995 - 3486215 | 42291.4 |
| p-type conjugative transfer protein trbg | SGRAN_RS15955 | Not Available | Negative | 3486212 - 3487030 | 29600.5 |
| conjugal transfer protein trbf | SGRAN_RS15960 | Not Available | Negative | 3487045 - 3487728 | 25286.9 |
| p-type conjugative transfer protein trbl | SGRAN_RS15965 | Not Available | Negative | 3487733 - 3489013 | 42665.1 |
| putative entry exclusion protein trbk-alt | SGRAN_RS15970 | Not Available | Negative | 3489010 - 3489261 | 8624.32 |
| p-type conjugative transfer protein trbj | SGRAN_RS15975 | Not Available | Negative | 3489263 - 3489976 | 24914.4 |
| conjugal transfer protein trbe | SGRAN_RS15980 | Not Available | Negative | 3489973 - 3492414 | 88881.8 |
| virb3 family type iv secretion system protein | SGRAN_RS15985 | Not Available | Negative | 3492411 - 3492680 | 9660.99 |
| trbc/virb2 family protein | SGRAN_RS15990 | Not Available | Negative | 3492680 - 3493012 | 11323.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.