Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna helicase recg | SGRAN_RS15900 | Not Available | Negative | 3472807 - 3474873 | 74620.6 |
| succinate dehydrogenase assembly factor 2 | SGRAN_RS15905 | Not Available | Positive | 3475081 - 3475341 | 10232.1 |
| transcription-repair coupling factor | SGRAN_RS15910 | Not Available | Positive | 3475338 - 3478925 | 130087.0 |
| ggdef domain-containing phosphodiesterase | SGRAN_RS15915 | Not Available | Negative | 3479101 - 3480297 | 42543.2 |
| gtp 3',8-cyclase moaa | SGRAN_RS15920 | Not Available | Positive | 3480358 - 3481365 | 36199.0 |
| nad kinase | SGRAN_RS15925 | Not Available | Positive | 3481390 - 3482160 | 28339.5 |
| Trna-asn | Not Available | Not Available | Positive | 3482270 - 3482344 | Not Available |
| hypothetical protein | SGRAN_RS23060 | Not Available | Positive | 3482477 - 3482755 | 10029.2 |
| copper resistance protein copc | SGRAN_RS23065 | Not Available | Negative | 3482870 - 3483955 | 40438.0 |
| hypothetical protein | SGRAN_RS22635 | Not Available | Positive | 3484616 - 3484762 | 5453.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.