Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase large subunit | SGRAN_RS15805 | Not Available | Negative | 3448792 - 3452133 | 119164.0 |
| hypothetical protein | SGRAN_RS22340 | Not Available | Negative | 3452133 - 3452591 | 16575.9 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | SGRAN_RS15810 | Not Available | Negative | 3452593 - 3453780 | 40965.5 |
| gatb/yqey domain-containing protein | SGRAN_RS15815 | Not Available | Positive | 3453913 - 3454365 | 16073.5 |
| giy-yig nuclease family protein | SGRAN_RS15820 | Not Available | Positive | 3454485 - 3454844 | 13659.0 |
| dna primase | SGRAN_RS15825 | Not Available | Positive | 3454844 - 3456739 | 69119.8 |
| rna polymerase sigma factor rpod | SGRAN_RS15830 | Not Available | Positive | 3456770 - 3458776 | 75724.7 |
| pspc domain-containing protein | SGRAN_RS23055 | Not Available | Positive | 3459624 - 3460025 | 14709.8 |
| duf6975 family protein | SGRAN_RS15840 | Not Available | Positive | 3460283 - 3460954 | 23322.8 |
| moxr family atpase | SGRAN_RS15845 | Not Available | Positive | 3461159 - 3462004 | 32116.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.