Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SGRAN_RS15755 | Not Available | Positive | 3442921 - 3443334 | 15230.1 |
| ynfa family protein | SGRAN_RS15760 | Not Available | Positive | 3443331 - 3443669 | 11699.5 |
| Tmrna,resume consensus sequence (at 215): aataagtgctaacgataa | Not Available | Not Available | Positive | 3443858 - 3444205 | Not Available |
| large conductance mechanosensitive channel protein mscl | SGRAN_RS15770 | Not Available | Negative | 3444255 - 3444668 | 14712.3 |
| lema family protein | SGRAN_RS15775 | Not Available | Positive | 3444792 - 3445388 | 21489.6 |
| ygcg family protein | SGRAN_RS15780 | Not Available | Positive | 3445504 - 3446277 | 26808.6 |
| tpm domain-containing protein | SGRAN_RS15785 | Not Available | Positive | 3446290 - 3446970 | 24493.9 |
| nudix hydrolase | SGRAN_RS15790 | Not Available | Positive | 3446999 - 3447544 | 19208.9 |
| rhomboid family intramembrane serine protease | SGRAN_RS15795 | Not Available | Negative | 3447569 - 3448204 | 22011.7 |
| transcription elongation factor grea | SGRAN_RS15800 | Not Available | Negative | 3448218 - 3448694 | 17272.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.