Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid permease | SGRAN_RS15525 | Not Available | Negative | 3397050 - 3398453 | 48844.9 |
| yoak family protein | SGRAN_RS15530 | Not Available | Negative | 3398518 - 3399159 | 21873.9 |
| 4a-hydroxytetrahydrobiopterin dehydratase | SGRAN_RS15535 | Not Available | Negative | 3399167 - 3399454 | 10866.8 |
| metallopeptidase family protein | SGRAN_RS15540 | Not Available | Positive | 3399507 - 3399935 | 15801.6 |
| heme abc exporter atp-binding protein ccma | SGRAN_RS15545 | Not Available | Positive | 3399932 - 3400519 | 20453.2 |
| heme exporter protein ccmb | SGRAN_RS15550 | Not Available | Positive | 3400665 - 3401312 | 21798.6 |
| 50s ribosomal protein l1 | SGRAN_RS15555 | Not Available | Negative | 3401509 - 3402204 | 24131.6 |
| 50s ribosomal protein l11 | SGRAN_RS15560 | Not Available | Negative | 3402209 - 3402640 | 15061.4 |
| acyl-coa thioesterase ii | SGRAN_RS15565 | Not Available | Negative | 3402800 - 3403738 | 34827.5 |
| transcription termination/antitermination protein nusg | SGRAN_RS15570 | Not Available | Negative | 3403823 - 3404359 | 19900.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.