Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hexameric tyrosine-coordinated heme protein | SGRAN_RS15475 | Not Available | Negative | 3387164 - 3387400 | 8138.53 |
| hypothetical protein | SGRAN_RS15480 | Not Available | Positive | 3387643 - 3388227 | 18927.2 |
| tetr/acrr family transcriptional regulator | SGRAN_RS15485 | Not Available | Negative | 3388314 - 3388955 | 22534.7 |
| carotenoid oxygenase family protein | SGRAN_RS15490 | Not Available | Positive | 3389028 - 3390470 | 52949.2 |
| hypothetical protein | SGRAN_RS15495 | Not Available | Positive | 3390591 - 3391613 | 34648.3 |
| 50s ribosomal protein l7/l12 | SGRAN_RS15500 | Not Available | Negative | 3391713 - 3392087 | 12490.0 |
| 50s ribosomal protein l10 | SGRAN_RS15505 | Not Available | Negative | 3392155 - 3392670 | 17338.0 |
| padr family transcriptional regulator | SGRAN_RS15510 | Not Available | Positive | 3393255 - 3393848 | 21769.2 |
| duf2218 domain-containing protein | SGRAN_RS15515 | Not Available | Positive | 3393860 - 3394207 | 12802.9 |
| duf3857 domain-containing protein | SGRAN_RS15520 | Not Available | Negative | 3394180 - 3396978 | 100182.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.