Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
collagen binding domain-containing proteinSGRAN_RS01295Not AvailableNegative280102 - 28284998017.3
molecular chaperoneSGRAN_RS01300Not AvailableNegative282883 - 28370428984.1
duf4402 domain-containing proteinSGRAN_RS01305Not AvailableNegative283912 - 28440916010.9
hypothetical proteinSGRAN_RS01310Not AvailablePositive284585 - 28499515570.6
parb/repb/spo0j family partition proteinSGRAN_RS01315Not AvailableNegative285021 - 28597433500.4
para family proteinSGRAN_RS01320Not AvailableNegative285975 - 28675727996.9
16s rrna (guanine(527)-n(7))-methyltransferase rsmgSGRAN_RS01325Not AvailableNegative286754 - 28741924398.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgSGRAN_RS01330Not AvailableNegative287416 - 28927866013.8
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeSGRAN_RS01335Not AvailableNegative289357 - 29066145364.4
duf6489 family proteinSGRAN_RS01340Not AvailableNegative290685 - 29098110455.9

Displaying genes 311 – 320 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.