Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase assembly protein | SGRAN_RS15185 | Not Available | Negative | 3327057 - 3327611 | 20500.6 |
| hypothetical protein | SGRAN_RS22630 | Not Available | Negative | 3327608 - 3327748 | 5394.51 |
| heme o synthase | SGRAN_RS15190 | Not Available | Negative | 3327745 - 3328656 | 32571.5 |
| cytochrome c oxidase subunit i | SGRAN_RS15195 | Not Available | Negative | 3328866 - 3330533 | 61120.2 |
| cytochrome c oxidase subunit ii | SGRAN_RS15200 | Not Available | Negative | 3330551 - 3331612 | 36530.2 |
| orotate phosphoribosyltransferase | SGRAN_RS15205 | Not Available | Positive | 3331843 - 3332427 | 20590.8 |
| pyridoxine 5'-phosphate synthase | SGRAN_RS15210 | Not Available | Positive | 3332424 - 3333167 | 26742.0 |
| holo-acp synthase | SGRAN_RS15215 | Not Available | Positive | 3333234 - 3333641 | 14696.8 |
| signal peptidase i | SGRAN_RS15220 | Not Available | Positive | 3333638 - 3334486 | 30565.8 |
| ai-2e family transporter | SGRAN_RS15225 | Not Available | Positive | 3334492 - 3335574 | 38014.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.