Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | SGRAN_RS15135 | Not Available | Negative | 3315823 - 3318288 | 88613.6 |
| helix-turn-helix transcriptional regulator | SGRAN_RS15140 | Not Available | Positive | 3318429 - 3319178 | 26929.2 |
| acyl-coa dehydrogenase family protein | SGRAN_RS15145 | Not Available | Positive | 3319226 - 3320356 | 41263.4 |
| acyl-coa dehydrogenase family protein | SGRAN_RS15150 | Not Available | Negative | 3320366 - 3321397 | 34978.4 |
| diguanylate cyclase | SGRAN_RS15155 | Not Available | Positive | 3321609 - 3322739 | 41456.7 |
| class i sam-dependent methyltransferase | SGRAN_RS15160 | Not Available | Negative | 3322754 - 3323638 | 32634.8 |
| threonine synthase | SGRAN_RS15165 | Not Available | Negative | 3323643 - 3325040 | 49876.7 |
| surf1 family protein | SGRAN_RS15170 | Not Available | Negative | 3325069 - 3325710 | 22741.9 |
| duf983 domain-containing protein | SGRAN_RS15175 | Not Available | Negative | 3325703 - 3326098 | 13984.9 |
| cytochrome c oxidase subunit 3 | SGRAN_RS15180 | Not Available | Negative | 3326100 - 3326975 | 32756.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.