Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxythreonine-4-phosphate dehydrogenase pdxaSGRAN_RS14985Not AvailablePositive3282842 - 328386134769.1
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaSGRAN_RS14990Not AvailablePositive3283858 - 328470330172.8
tetratricopeptide repeat proteinSGRAN_RS14995Not AvailableNegative3284700 - 328523018098.5
rsmb/nop family class i sam-dependent rna methyltransferaseSGRAN_RS15000Not AvailableNegative3285263 - 328645341527.5
imp dehydrogenaseSGRAN_RS15005Not AvailableNegative3286618 - 328807551245.0
mfs transporterSGRAN_RS15010Not AvailablePositive3288145 - 328954248586.3
acyl-coa dehydrogenase family proteinSGRAN_RS15015Not AvailableNegative3289823 - 329100742820.4
response regulator transcription factorSGRAN_RS15020Not AvailableNegative3291126 - 329165919813.7
atp-binding proteinSGRAN_RS15025Not AvailableNegative3291659 - 329296345439.7
surf1 family proteinSGRAN_RS15030Not AvailableNegative3292963 - 329367025489.8

Displaying genes 3091 – 3100 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.