Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| j domain-containing protein | SGRAN_RS14885 | Not Available | Negative | 3259803 - 3260339 | 19891.7 |
| polyphosphate kinase 2 family protein | SGRAN_RS14890 | Not Available | Negative | 3260385 - 3261170 | 30169.5 |
| alpha/beta fold hydrolase | SGRAN_RS14895 | Not Available | Negative | 3261263 - 3262141 | 31752.8 |
| type ii toxin-antitoxin system vapc family toxin | SGRAN_RS14900 | Not Available | Negative | 3262138 - 3262524 | 14425.4 |
| hypothetical protein | SGRAN_RS14905 | Not Available | Negative | 3262521 - 3262874 | 12838.2 |
| aspartate--trna ligase | SGRAN_RS14910 | Not Available | Negative | 3262937 - 3264718 | 65342.5 |
| ribonuclease d | SGRAN_RS14915 | Not Available | Positive | 3265166 - 3266350 | 43495.6 |
| ppx/gppa family phosphatase | SGRAN_RS14920 | Not Available | Negative | 3266417 - 3267877 | 51381.2 |
| rna degradosome polyphosphate kinase | SGRAN_RS14925 | Not Available | Negative | 3267882 - 3270050 | 80848.2 |
| hdaa/dnaa family protein | SGRAN_RS14930 | Not Available | Negative | 3270041 - 3270697 | 23489.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.