Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | SGRAN_RS14835 | Not Available | Negative | 3249305 - 3249679 | 13875.6 |
| chemotaxis protein chew | SGRAN_RS14840 | Not Available | Negative | 3249759 - 3250196 | 15012.5 |
| chemotaxis protein chea | SGRAN_RS14845 | Not Available | Negative | 3250193 - 3252595 | 84779.7 |
| histidine phosphotransferase family protein | SGRAN_RS14850 | Not Available | Negative | 3252646 - 3253302 | 23030.9 |
| rlua family pseudouridine synthase | SGRAN_RS14855 | Not Available | Positive | 3253424 - 3254380 | 33939.2 |
| rna polymerase sigma factor rpoh | SGRAN_RS14860 | Not Available | Positive | 3254461 - 3255363 | 34018.8 |
| hypothetical protein | SGRAN_RS14865 | Not Available | Positive | 3256040 - 3256747 | 24111.2 |
| transporter | SGRAN_RS14870 | Not Available | Negative | 3257030 - 3257842 | 28144.3 |
| monofunctional biosynthetic peptidoglycan transglycosylase | SGRAN_RS14875 | Not Available | Positive | 3257889 - 3258602 | 26263.0 |
| ompa family protein | SGRAN_RS14880 | Not Available | Positive | 3258785 - 3259666 | 30997.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.