Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2062 domain-containing protein | SGRAN_RS14790 | Not Available | Negative | 3240708 - 3241325 | 22501.6 |
| ssra-binding protein smpb | SGRAN_RS14795 | Not Available | Negative | 3241322 - 3241807 | 18413.1 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SGRAN_RS14800 | Not Available | Negative | 3241878 - 3242753 | 30156.0 |
| lytic transglycosylase domain-containing protein | SGRAN_RS14805 | Not Available | Positive | 3242854 - 3244887 | 73137.6 |
| grea/greb family elongation factor | SGRAN_RS14810 | Not Available | Positive | 3244893 - 3245417 | 18767.1 |
| hypothetical protein | SGRAN_RS22625 | Not Available | Negative | 3245537 - 3245692 | 5495.77 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 3245771 - 3246176 | Not Available |
| n-acetylmuramoyl-l-alanine amidase | SGRAN_RS14820 | Not Available | Negative | 3246541 - 3247230 | 25570.6 |
| protein-glutamate o-methyltransferase cher | SGRAN_RS14825 | Not Available | Negative | 3247310 - 3248170 | 32206.9 |
| chemotaxis-specific protein-glutamate methyltransferase cheb | SGRAN_RS14830 | Not Available | Negative | 3248167 - 3249285 | 38663.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.