Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | SGRAN_RS14640 | Not Available | Positive | 3168515 - 3169468 | 33228.5 |
| tolc family outer membrane protein | SGRAN_RS14645 | Not Available | Positive | 3169521 - 3170963 | 51558.6 |
| rna helicase seca | SGRAN_RS14650 | Not Available | Negative | 3171134 - 3173155 | 74354.1 |
| site-2 protease family protein | SGRAN_RS14655 | Not Available | Negative | 3173148 - 3175301 | 79517.3 |
| hlyd family efflux transporter periplasmic adaptor subunit | SGRAN_RS14660 | Not Available | Negative | 3175450 - 3177303 | 66519.1 |
| duf3467 domain-containing protein | SGRAN_RS14665 | Not Available | Negative | 3177319 - 3177669 | 12532.8 |
| ig-like domain-containing protein | SGRAN_RS22310 | Not Available | Negative | 3177669 - 3214979 | 1311840.0 |
| lrp/asnc family transcriptional regulator | SGRAN_RS14675 | Not Available | Negative | 3215171 - 3215635 | 17199.9 |
| alanine racemase | SGRAN_RS14680 | Not Available | Positive | 3215762 - 3216901 | 40222.0 |
| d-amino acid dehydrogenase | SGRAN_RS14685 | Not Available | Positive | 3216898 - 3218145 | 44485.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.