Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyrosine-type recombinase/integraseSGRAN_RS14590Not AvailableNegative3154309 - 315566452111.1
site-specific integraseSGRAN_RS14595Not AvailableNegative3155661 - 315689346554.2
strawberry notch-like ntp hydrolase domain-containing proteinSGRAN_RS14600Not AvailableNegative3156984 - 315920079311.6
toprim domain-containing proteinSGRAN_RS14605Not AvailableNegative3159242 - 316017133475.9
lytic transglycosylase domain-containing proteinSGRAN_RS14610Not AvailablePositive3160296 - 316095223297.0
site-specific integraseSGRAN_RS14615Not AvailableNegative3161042 - 316231346734.4
fmn-binding glutamate synthase family proteinSGRAN_RS14620Not AvailableNegative3162569 - 316416758008.2
hypothetical proteinSGRAN_RS14625Not AvailableNegative3164283 - 316484620742.7
serine/threonine-protein kinaseSGRAN_RS14630Not AvailablePositive3165266 - 316768688746.6
ecf-type sigma factorSGRAN_RS14635Not AvailableNegative3167718 - 316827821159.6

Displaying genes 3011 – 3020 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.