Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system dna-binding domain-containing protein | SGRAN_RS14455 | Not Available | Negative | 3123685 - 3126069 | 88169.6 |
| ribbon-helix-helix protein, copg family | SGRAN_RS21815 | Not Available | Negative | 3126059 - 3126391 | 12105.3 |
| hypothetical protein | SGRAN_RS22300 | Not Available | Negative | 3126544 - 3126774 | 8548.1 |
| hypothetical protein | SGRAN_RS14460 | Not Available | Positive | 3126831 - 3127025 | 6711.83 |
| hypothetical protein | SGRAN_RS14465 | Not Available | Negative | 3127128 - 3127364 | 8440.72 |
| duf6437 family protein | SGRAN_RS23045 | Not Available | Positive | 3127688 - 3127918 | 8456.31 |
| single-stranded dna-binding protein | SGRAN_RS14475 | Not Available | Negative | 3128033 - 3128422 | 14266.6 |
| duf6915 family protein | SGRAN_RS14480 | Not Available | Negative | 3128726 - 3129154 | 15477.5 |
| duf6878 family protein | SGRAN_RS14485 | Not Available | Negative | 3129165 - 3129626 | 16522.3 |
| duf2493 domain-containing protein | SGRAN_RS14490 | Not Available | Negative | 3129748 - 3130701 | 34638.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.