Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna methyltransferase | SGRAN_RS14410 | Not Available | Negative | 3112297 - 3113244 | 34736.2 |
| duf6079 family protein | SGRAN_RS14415 | Not Available | Negative | 3113278 - 3117003 | 138689.0 |
| brex-3 system p-loop-containing protein brxf | SGRAN_RS22295 | Not Available | Negative | 3117031 - 3117489 | 16644.3 |
| wyl domain-containing protein | SGRAN_RS14425 | Not Available | Negative | 3117482 - 3118378 | 33063.1 |
| s24 family peptidase | SGRAN_RS14435 | Not Available | Positive | 3118788 - 3119432 | 23995.8 |
| thermonuclease family protein | SGRAN_RS23035 | Not Available | Positive | 3119444 - 3119869 | 14980.9 |
| duf5818 domain-containing protein | SGRAN_RS23040 | Not Available | Positive | 3119770 - 3120168 | 14221.3 |
| duf6961 family protein | SGRAN_RS14440 | Not Available | Positive | 3120168 - 3120365 | 7123.54 |
| hypothetical protein | SGRAN_RS14445 | Not Available | Negative | 3120399 - 3120638 | 8482.06 |
| mobf family relaxase | SGRAN_RS14450 | Not Available | Negative | 3120711 - 3123647 | 106251.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.