Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv conjugative transfer system protein trae | SGRAN_RS14260 | Not Available | Positive | 3078504 - 3079076 | 21022.3 |
| type-f conjugative transfer system secretin trak | SGRAN_RS14265 | Not Available | Positive | 3079076 - 3079834 | 26734.6 |
| trbi/virb10 family protein | SGRAN_RS14270 | Not Available | Positive | 3079827 - 3081161 | 45467.8 |
| dsbc family protein | SGRAN_RS14275 | Not Available | Positive | 3081158 - 3082048 | 31051.4 |
| conjugal transfer protein trav | SGRAN_RS14280 | Not Available | Positive | 3082054 - 3082797 | 26123.8 |
| type iv secretion system protein trac | SGRAN_RS14285 | Not Available | Positive | 3082797 - 3085343 | 93367.5 |
| hypothetical protein | SGRAN_RS14290 | Not Available | Positive | 3085376 - 3085771 | 14541.8 |
| type-f conjugative transfer system protein trbi | SGRAN_RS14295 | Not Available | Positive | 3085768 - 3086175 | 14666.8 |
| s26 family signal peptidase | SGRAN_RS14300 | Not Available | Positive | 3086162 - 3086686 | 18740.0 |
| type-f conjugative transfer system protein traw | SGRAN_RS14305 | Not Available | Positive | 3086683 - 3087327 | 23621.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.