Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | SGRAN_RS14225 | Not Available | Negative | 3072914 - 3074140 | 44686.2 |
| hypothetical protein | SGRAN_RS14230 | Not Available | Negative | 3074254 - 3074619 | 12879.5 |
| trans-aconitate 2-methyltransferase | SGRAN_RS21790 | Not Available | Negative | 3074694 - 3075314 | 23129.2 |
| merr family dna-binding protein | SGRAN_RS23175 | Not Available | Negative | 3075389 - 3075595 | 7523.99 |
| merr family transcriptional regulator | SGRAN_RS23180 | Not Available | Negative | 3075596 - 3075781 | 6909.37 |
| cation transporter | SGRAN_RS14240 | Not Available | Positive | 3075913 - 3076545 | 22595.8 |
| alpa family phage regulatory protein | SGRAN_RS21795 | Not Available | Negative | 3076722 - 3076973 | 9320.08 |
| transcriptional regulator | SGRAN_RS14245 | Not Available | Negative | 3077023 - 3077484 | 17197.8 |
| trbc/virb2 family protein | SGRAN_RS14250 | Not Available | Positive | 3077833 - 3078177 | 11234.8 |
| type iv conjugative transfer system protein tral | SGRAN_RS14255 | Not Available | Positive | 3078204 - 3078491 | 10527.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.