Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoprenylcysteine carboxylmethyltransferase family protein | SGRAN_RS14175 | Not Available | Positive | 3063548 - 3064180 | 24381.8 |
| apc family permease | SGRAN_RS14180 | Not Available | Positive | 3064259 - 3065542 | 44285.0 |
| ion channel | SGRAN_RS14185 | Not Available | Positive | 3065636 - 3065986 | 12360.4 |
| duf305 domain-containing protein | SGRAN_RS14190 | Not Available | Positive | 3066051 - 3066563 | 19702.3 |
| duf6692 family protein | SGRAN_RS14195 | Not Available | Positive | 3066560 - 3067045 | 16692.0 |
| hypothetical protein | SGRAN_RS14200 | Not Available | Positive | 3067108 - 3067398 | 10903.0 |
| duf302 domain-containing protein | SGRAN_RS14205 | Not Available | Positive | 3067401 - 3067787 | 13956.9 |
| copper-binding protein | SGRAN_RS14210 | Not Available | Negative | 3067886 - 3068272 | 13724.4 |
| efflux rnd transporter permease subunit | SGRAN_RS14215 | Not Available | Negative | 3068251 - 3071415 | 113989.0 |
| efflux rnd transporter periplasmic adaptor subunit | SGRAN_RS14220 | Not Available | Negative | 3071412 - 3072917 | 52744.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.