Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSGRAN_RS13935Not AvailableNegative3002567 - 30028097751.22
nudix domain-containing proteinSGRAN_RS13940Not AvailableNegative3002984 - 300376628670.0
duf4126 domain-containing proteinSGRAN_RS13945Not AvailablePositive3003886 - 300450621088.3
nad(p)/fad-dependent oxidoreductaseSGRAN_RS13950Not AvailableNegative3004510 - 300574243402.1
tonb-dependent receptorSGRAN_RS13955Not AvailableNegative3005813 - 300825486215.6
hypothetical proteinSGRAN_RS22270Not AvailableNegative3008593 - 300912617525.8
tonb-dependent receptor domain-containing proteinSGRAN_RS21775Not AvailableNegative3009255 - 3012533120677.0
rna polymerase sigma factorSGRAN_RS13965Not AvailablePositive3012963 - 301347819593.3
fecr domain-containing proteinSGRAN_RS13970Not AvailablePositive3013475 - 301450337074.4
duf2147 domain-containing proteinSGRAN_RS13975Not AvailableNegative3014561 - 301499815267.5

Displaying genes 2871 – 2880 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.