Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ump kinase | SGRAN_RS13885 | Not Available | Negative | 2990090 - 2990812 | 25423.1 |
| translation elongation factor ts | SGRAN_RS13890 | Not Available | Negative | 2990928 - 2991854 | 31563.6 |
| 30s ribosomal protein s2 | SGRAN_RS13895 | Not Available | Negative | 2991988 - 2992812 | 29404.0 |
| hypothetical protein | SGRAN_RS13900 | Not Available | Positive | 2993135 - 2993392 | 8355.28 |
| phosphatidylcholine/phosphatidylserine synthase | SGRAN_RS13905 | Not Available | Negative | 2993376 - 2994146 | 27596.2 |
| phosphatidylserine decarboxylase | SGRAN_RS13910 | Not Available | Negative | 2994158 - 2994892 | 26522.5 |
| nadp-dependent isocitrate dehydrogenase | SGRAN_RS13915 | Not Available | Positive | 2995050 - 2996264 | 45293.2 |
| cation:proton antiporter | SGRAN_RS13920 | Not Available | Positive | 2996315 - 2998099 | 62330.0 |
| m16 family metallopeptidase | SGRAN_RS13925 | Not Available | Negative | 2998118 - 3001054 | 105061.0 |
| carbon-nitrogen hydrolase family protein | SGRAN_RS13930 | Not Available | Positive | 3001141 - 3002019 | 31136.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.