Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol kinase | SGRAN_RS13835 | Not Available | Positive | 2979679 - 2981151 | 51326.0 |
| 50s ribosomal protein l31 | SGRAN_RS13840 | Not Available | Negative | 2981188 - 2981415 | 8433.0 |
| 3-hydroxyacyl-acp dehydratase fabz | SGRAN_RS13845 | Not Available | Negative | 2981782 - 2982261 | 17224.4 |
| omph family outer membrane protein | SGRAN_RS13850 | Not Available | Negative | 2982266 - 2982958 | 24302.9 |
| outer membrane protein assembly factor bama | SGRAN_RS13855 | Not Available | Negative | 2982958 - 2985666 | 100768.0 |
| rip metalloprotease rsep | SGRAN_RS13860 | Not Available | Negative | 2985736 - 2986866 | 41198.5 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | SGRAN_RS13865 | Not Available | Negative | 2986859 - 2988022 | 40387.6 |
| phosphatidate cytidylyltransferase | SGRAN_RS13870 | Not Available | Negative | 2988024 - 2988698 | 22542.3 |
| polyprenyl diphosphate synthase | SGRAN_RS13875 | Not Available | Negative | 2988701 - 2989345 | 23658.2 |
| ribosome recycling factor | SGRAN_RS13880 | Not Available | Negative | 2989511 - 2990065 | 20317.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.