Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xrta/pep-cterm system exopolysaccharide export protein | SGRAN_RS13735 | Not Available | Negative | 2958455 - 2959108 | 23269.3 |
| pyridoxal-dependent decarboxylase, exosortase a system-associated | SGRAN_RS13740 | Not Available | Negative | 2959291 - 2960520 | 41946.5 |
| acyl-coa ligase (amp-forming), exosortase a system-associated | SGRAN_RS13745 | Not Available | Negative | 2960517 - 2962049 | 54188.7 |
| gnat family n-acetyltransferase | SGRAN_RS13750 | Not Available | Positive | 2962085 - 2963080 | 36625.1 |
| acyl carrier protein | SGRAN_RS13755 | Not Available | Positive | 2963092 - 2963355 | 9457.18 |
| hypothetical protein | SGRAN_RS13760 | Not Available | Positive | 2963371 - 2964045 | 23228.2 |
| hydrolase 1, exosortase a system-associated | SGRAN_RS13765 | Not Available | Positive | 2964030 - 2964821 | 27564.8 |
| thioredoxin-disulfide reductase | SGRAN_RS13770 | Not Available | Negative | 2965130 - 2966095 | 33941.7 |
| class i sam-dependent methyltransferase | SGRAN_RS13775 | Not Available | Positive | 2966224 - 2966850 | 22436.9 |
| rhodanese-related sulfurtransferase | SGRAN_RS13780 | Not Available | Negative | 2967072 - 2967815 | 26870.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.