Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine--trna ligase | SGRAN_RS13585 | Not Available | Negative | 2924643 - 2927300 | 94085.2 |
| hypothetical protein | SGRAN_RS13590 | Not Available | Negative | 2927397 - 2927996 | 21292.5 |
| glutathione s-transferase family protein | SGRAN_RS13595 | Not Available | Negative | 2927986 - 2928612 | 23061.6 |
| tonb-dependent siderophore receptor | SGRAN_RS13600 | Not Available | Positive | 2929078 - 2931282 | 78824.5 |
| abc transporter substrate-binding protein | SGRAN_RS13605 | Not Available | Positive | 2931300 - 2932466 | 41754.7 |
| ynce family protein | SGRAN_RS13610 | Not Available | Positive | 2932468 - 2933529 | 36601.5 |
| abc transporter atp-binding protein | SGRAN_RS13615 | Not Available | Negative | 2933586 - 2934365 | 27218.2 |
| iron abc transporter permease | SGRAN_RS13620 | Not Available | Negative | 2934362 - 2935411 | 36829.2 |
| alpha/beta hydrolase | SGRAN_RS13625 | Not Available | Positive | 2935542 - 2936348 | 29281.8 |
| cytochrome b | SGRAN_RS13630 | Not Available | Positive | 2936630 - 2937208 | 21100.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.