Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyanate transporter | SGRAN_RS13535 | Not Available | Negative | 2915834 - 2917024 | 41252.8 |
| nucleoside deaminase | SGRAN_RS13540 | Not Available | Negative | 2917031 - 2917495 | 16416.5 |
| ankyrin repeat domain-containing protein | SGRAN_RS13545 | Not Available | Negative | 2917507 - 2918100 | 20010.8 |
| amidohydrolase | SGRAN_RS13550 | Not Available | Negative | 2918181 - 2919395 | 42285.3 |
| lysr family transcriptional regulator | SGRAN_RS13555 | Not Available | Positive | 2919569 - 2920456 | 32582.0 |
| hypothetical protein | SGRAN_RS13560 | Not Available | Negative | 2920469 - 2920729 | 9647.38 |
| atp-binding protein | SGRAN_RS13565 | Not Available | Positive | 2920823 - 2922280 | 52362.8 |
| nadph:quinone oxidoreductase family protein | SGRAN_RS13570 | Not Available | Negative | 2922497 - 2923474 | 34043.3 |
| glycoside hydrolase family 108 protein | SGRAN_RS13575 | Not Available | Positive | 2923545 - 2924114 | 20795.8 |
| holin family protein | SGRAN_RS13580 | Not Available | Positive | 2924172 - 2924585 | 14761.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.