Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1837 domain-containing protein | SGRAN_RS01100 | Not Available | Positive | 229244 - 230026 | 29284.4 |
| dead/deah box helicase | SGRAN_RS01105 | Not Available | Positive | 230013 - 233531 | 129106.0 |
| rna polymerase sigma factor | SGRAN_RS01110 | Not Available | Positive | 233704 - 234558 | 32355.3 |
| hypothetical protein | SGRAN_RS01115 | Not Available | Positive | 234555 - 235133 | 20912.5 |
| uvrd-helicase domain-containing protein | SGRAN_RS01120 | Not Available | Positive | 235135 - 238536 | 123403.0 |
| multiubiquitin domain-containing protein | SGRAN_RS01125 | Not Available | Positive | 238618 - 239364 | 27428.5 |
| thif family adenylyltransferase | SGRAN_RS01130 | Not Available | Positive | 239339 - 240511 | 43016.2 |
| duf6527 family protein | SGRAN_RS21425 | Not Available | Positive | 240511 - 240948 | 16776.9 |
| site-specific integrase | SGRAN_RS01135 | Not Available | Negative | 241074 - 242429 | 49989.3 |
| s9 family peptidase | SGRAN_RS01140 | Not Available | Negative | 242691 - 243833 | 41992.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.