Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-f family atp-binding cassette domain-containing protein | SGRAN_RS13390 | Not Available | Positive | 2874688 - 2876469 | 64851.1 |
| duf6456 domain-containing protein | SGRAN_RS13395 | Not Available | Negative | 2876572 - 2877054 | 17115.7 |
| helix-turn-helix domain-containing protein | SGRAN_RS13400 | Not Available | Positive | 2877159 - 2877719 | 20354.7 |
| glycosyltransferase | SGRAN_RS13405 | Not Available | Positive | 2878003 - 2879166 | 40427.1 |
| protein translocase subunit secf | SGRAN_RS13410 | Not Available | Negative | 2879180 - 2880160 | 35259.2 |
| protein translocase subunit secd | SGRAN_RS13415 | Not Available | Negative | 2880173 - 2881786 | 57468.9 |
| preprotein translocase subunit yajc | SGRAN_RS13420 | Not Available | Negative | 2881836 - 2882165 | 11622.4 |
| Trna-pro | Not Available | Not Available | Positive | 2882432 - 2882508 | Not Available |
| acetyl-coa c-acyltransferase | SGRAN_RS13430 | Not Available | Negative | 2882718 - 2883920 | 42223.5 |
| alpha/beta hydrolase | SGRAN_RS13435 | Not Available | Positive | 2884062 - 2884925 | 31672.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.