Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conjugal transfer protein trbeSGRAN_RS00910Not AvailableNegative190561 - 19301489537.6
virb3 family type iv secretion system proteinSGRAN_RS00915Not AvailableNegative193028 - 1933099908.41
trbc/virb2 family proteinSGRAN_RS00920Not AvailableNegative193309 - 19364111384.0
p-type conjugative transfer atpase trbbSGRAN_RS00925Not AvailableNegative193638 - 19461834363.4
copg family transcriptional regulatorSGRAN_RS00930Not AvailableNegative194914 - 19533915564.8
conjugal transfer protein tragSGRAN_RS00935Not AvailableNegative195344 - 19732973597.1
vird2 family relaxase/mobilization nucleaseSGRAN_RS00940Not AvailableNegative197478 - 19921764098.0
lytic transglycosylase domain-containing proteinSGRAN_RS00945Not AvailableNegative199461 - 20018325173.9
duf736 domain-containing proteinSGRAN_RS00950Not AvailableNegative200188 - 20052012109.0
s26 family signal peptidaseSGRAN_RS00955Not AvailableNegative200560 - 20110519590.9

Displaying genes 231 – 240 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.