Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
periplasmic heavy metal sensorSGRAN_RS00675Not AvailablePositive140089 - 14052615980.3
rna polymerase sigma factorSGRAN_RS00680Not AvailablePositive140523 - 14110721935.0
copper resistance system multicopper oxidaseSGRAN_RS00685Not AvailablePositive141227 - 14306266515.8
copper resistance protein bSGRAN_RS00690Not AvailablePositive143059 - 14427042937.3
duf305 domain-containing proteinSGRAN_RS00695Not AvailablePositive144363 - 14475214422.4
duf411 domain-containing proteinSGRAN_RS00700Not AvailablePositive144754 - 14527818218.9
hypothetical proteinSGRAN_RS00705Not AvailablePositive145305 - 14565211897.1
tonb-dependent siderophore receptorSGRAN_RS00710Not AvailablePositive145896 - 14836788095.1
lysr substrate-binding domain-containing proteinSGRAN_RS00715Not AvailableNegative148404 - 14930933130.2
amino acid abc transporter substrate-binding proteinSGRAN_RS00720Not AvailablePositive149365 - 15043539241.0

Displaying genes 181 – 190 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.