Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | SGRAN_RS00475 | Not Available | Positive | 88478 - 89647 | 39750.3 |
| efflux rnd transporter permease subunit | SGRAN_RS00480 | Not Available | Positive | 89651 - 92893 | 115360.0 |
| duf190 domain-containing protein | SGRAN_RS00485 | Not Available | Positive | 92906 - 93250 | 12615.1 |
| srpbcc family protein | SGRAN_RS00490 | Not Available | Positive | 93332 - 93802 | 18032.7 |
| heavy metal translocating p-type atpase | SGRAN_RS00495 | Not Available | Positive | 93989 - 96529 | 89471.8 |
| efflux rnd transporter permease subunit | SGRAN_RS00500 | Not Available | Positive | 96574 - 99753 | 113721.0 |
| srpbcc family protein | SGRAN_RS00505 | Not Available | Positive | 99767 - 100252 | 19021.2 |
| disulfide bond formation protein b | SGRAN_RS00510 | Not Available | Positive | 100249 - 100683 | 15053.0 |
| thioredoxin domain-containing protein | SGRAN_RS00515 | Not Available | Positive | 100680 - 101324 | 22694.6 |
| hypothetical protein | SGRAN_RS22760 | Not Available | Negative | 101495 - 101794 | 10466.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.