Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2285 domain-containing protein | SGRAN_RS00275 | Not Available | Positive | 53201 - 53734 | 19451.6 |
| alpa family transcriptional regulator | SGRAN_RS00280 | Not Available | Positive | 53833 - 54084 | 9075.93 |
| duf2840 domain-containing protein | SGRAN_RS00285 | Not Available | Positive | 54081 - 54590 | 18887.7 |
| s26 family signal peptidase | SGRAN_RS00290 | Not Available | Positive | 54587 - 55156 | 20260.8 |
| duf736 domain-containing protein | SGRAN_RS00295 | Not Available | Positive | 55162 - 55494 | 11796.0 |
| lytic transglycosylase domain-containing protein | SGRAN_RS00300 | Not Available | Positive | 55498 - 56247 | 25653.5 |
| duf3363 domain-containing protein | SGRAN_RS00305 | Not Available | Positive | 56479 - 58224 | 64005.6 |
| conjugal transfer protein trag | SGRAN_RS00310 | Not Available | Positive | 58253 - 60301 | 74535.4 |
| ribbon-helix-helix protein, copg family | SGRAN_RS00315 | Not Available | Positive | 60298 - 60738 | 16628.9 |
| jab domain-containing protein | SGRAN_RS21400 | Not Available | Negative | 60714 - 61508 | 29338.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.