Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate 5-kinase | SGRAN_RS04730 | Not Available | Negative | 999082 - 1000188 | 37755.7 |
| gtpase obge | SGRAN_RS04735 | Not Available | Negative | 1000314 - 1001357 | 36686.2 |
| tetr/acrr family transcriptional regulator | SGRAN_RS04740 | Not Available | Negative | 1001426 - 1002034 | 21167.6 |
| metal-dependent hydrolase | SGRAN_RS04745 | Not Available | Positive | 1002111 - 1003001 | 33912.9 |
| gnat family n-acetyltransferase | SGRAN_RS04750 | Not Available | Positive | 1003101 - 1003676 | 20780.9 |
| nfed family protein | SGRAN_RS04755 | Not Available | Negative | 1003917 - 1004363 | 15683.2 |
| spfh domain-containing protein | SGRAN_RS04760 | Not Available | Negative | 1004365 - 1005276 | 33470.3 |
| coa ester lyase | SGRAN_RS04765 | Not Available | Positive | 1005344 - 1006150 | 27494.9 |
| m28 family peptidase | SGRAN_RS04770 | Not Available | Positive | 1006393 - 1007892 | 51854.4 |
| class ii 3-deoxy-7-phosphoheptulonate synthase | SGRAN_RS04780 | Not Available | Negative | 1008142 - 1009515 | 50696.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.