Exiguobacterium sibiricum 255-15

Gram-positiveRodNon-motileFacultative aerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Family_XII

Genus

Exiguobacterium

Description

Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) was isolated from a depth of 43.6 m from a geological layer in the permafrost core of Kolyma Lowland (northeast of Siberia) estimated to be 2-3million years old. Exiguobacterium sibiricum is a psychrophilic non-spore forming Gram-positive bacterium. The cells are rod-shaped, motile with peritrichous flagella and their growth ranges are from -2.5 to 40 degrees Celsius. The cells can vary in shape and size depending on growth temperature. They occur singly, in pairs or infrequently in chains. Colonies appear orange-yellow (on TSA media). They are facultative anaerobes but grow more profusely aerobically. The nearest phylogenetic neighbors to isolate 255-15 were other Kolyma-Indigirka lowland permafrost isolates and grouped closely with the type strain (ATCC 953), isolated from skimmed milk and an Antarctic isolate of Exiguobacterium acetylicum. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of harsh conditions. The issue of long-term survival is of interest in the field of astrobiology. Organisms that survive such hostile environments may be used as models for understanding cellular responses on astral bodies. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyFamily_XII
GenusExiguobacterium
SpeciesExiguobacterium artemiae
Strain255-15

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Exiguobacterium sibiricum 255-15
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperatureNot Available
Temperature rangePsychrophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Exiguobacterium sibiricum 255-15

Accession NumberNC_010556.1

Gene Summary

Adenine Count

793700 bp

Thymine Count

792598 bp

Guanine Count

726711 bp

Cytosine Count

721127 bp

Genome Length

3034136 bp

Protein-coding Genes

3051 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaEXIG_RS00005B1YGB2+427 - 182152424.4
dna polymerase iii subunit betaEXIG_RS00010P05649+2009 - 314241906.2
s4 domain-containing protein yaaaEXIG_RS00015P05650+3283 - 35048138.74
dna replication/repair protein recfEXIG_RS00020B1YGB5+3506 - 466044015.9
dna topoisomerase (atp-hydrolyzing) subunit bEXIG_RS00025Q9X3Y6+4671 - 658470978.4
dna gyrase subunit aEXIG_RS00030P05653+6612 - 9272100041.0
hd-gyp domain-containing proteinEXIG_RS00035Q4UU85+9365 - 1041140760.5
16s ribosomal rnaNot AvailableNot Available+10772 - 12333Not Available
23s ribosomal rnaNot AvailableNot Available+12501 - 15415Not Available
5s ribosomal rnaNot AvailableNot Available+15463 - 15578Not Available

Displaying genes 1 – 10 of 3159 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

184 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da

Displaying 1–10 of 184 metabolites