Exiguobacterium sibiricum 255-15

Gram-positiveRodNon-motileFacultative aerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Family_XII

Genus

Exiguobacterium

Description

Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) was isolated from a depth of 43.6 m from a geological layer in the permafrost core of Kolyma Lowland (northeast of Siberia) estimated to be 2-3million years old. Exiguobacterium sibiricum is a psychrophilic non-spore forming Gram-positive bacterium. The cells are rod-shaped, motile with peritrichous flagella and their growth ranges are from -2.5 to 40 degrees Celsius. The cells can vary in shape and size depending on growth temperature. They occur singly, in pairs or infrequently in chains. Colonies appear orange-yellow (on TSA media). They are facultative anaerobes but grow more profusely aerobically. The nearest phylogenetic neighbors to isolate 255-15 were other Kolyma-Indigirka lowland permafrost isolates and grouped closely with the type strain (ATCC 953), isolated from skimmed milk and an Antarctic isolate of Exiguobacterium acetylicum. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of harsh conditions. The issue of long-term survival is of interest in the field of astrobiology. Organisms that survive such hostile environments may be used as models for understanding cellular responses on astral bodies. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyFamily_XII
GenusExiguobacterium
SpeciesExiguobacterium artemiae
Strain255-15

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Exiguobacterium sibiricum 255-15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperatureNot Available
Temperature rangePsychrophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Exiguobacterium sibiricum 255-15, complete sequence.

Gene Summary

Adenine Count

793700 bp

Thymine Count

792598 bp

Guanine Count

726711 bp

Cytosine Count

721127 bp

Genome Length

3034136 bp

Protein-coding Genes

3051 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiaminase iiEXIG_RS05010P25052Positive987802 - 98849726658.3
sporulation proteinEXIG_RS05015P71088Negative988565 - 98933828740.1
sam-dependent methyltransferaseEXIG_RS05020Not AvailablePositive989455 - 99063945571.4
brxa/brxb family bacilliredoxinEXIG_RS05025Q8EQ52Positive990674 - 99109915594.3
transporter substrate-binding domain-containing proteinEXIG_RS05030P54535Positive991404 - 99218028320.8
amino acid abc transporter permeaseEXIG_RS05035P54536Positive992241 - 99289723676.8
amino acid abc transporter atp-binding proteinEXIG_RS05040P54537Positive992911 - 99363326429.4
hd domain-containing proteinEXIG_RS05045P54168Positive993693 - 99429822660.9
zip family metal transporterEXIG_RS05050Not AvailableNegative994344 - 99505724280.2
2,4-dienoyl-coa reductaseEXIG_RS05055O34717Negative995208 - 99597227065.2

Displaying genes 1011 – 1020 of 3159 in total

Metabolites

238 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da

Displaying 1–10 of 238 metabolites

Health Effects

No health effects information available for this bacterium.