Rhodococcus erythropolis PR4

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus erythropolis PR4 is a Gram-positive, rod-shaped bacterium that thrives optimally at mesophilic temperatures and functions as a chemoheterotroph. This versatile microbe is often found in diverse environments, including soil, water, and even contaminated sites, where it utilizes organic substances as a source of carbon and energy. As a facultative anaerobe, R. erythropolis PR4 can grow in the presence or absence of oxygen, although it prefers aerobic conditions for optimal metabolism. The Gram-positive nature of R. erythropolis PR4 is characterized by its thick peptidoglycan layer, which provides structural integrity and resistance to certain antibiotics. The rod shape of this bacterium contributes to its efficient motility and allows it to readily colonize various substrates. It is categorized as a mesophile, indicating its preference for moderate temperature ranges, typically between 20-45°C, making it well-adapted to terrestrial environments. As a chemoheterotroph, R. erythropolis PR4 derives energy from the oxidation of organic compounds, which allows it to thrive in nutrient-rich environments. Its facultative anaerobic capabilities enable it to switch metabolic pathways depending on the oxygen availability, providing it an advantage in fluctuating habitats. Rhodococcus erythropolis PR4 is especially notable for its bioremediation potential, as it can degrade a variety of environmental pollutants, including hydrocarbons and heavy metals. This ability makes it a focal point of research in environmental microbiology, particularly for applications in cleaning up oil spills and other forms of contamination. Additionally, it has been studied for its role in industrial biotechnology, where it can be used to produce valuable compounds through bioconversion processes. With its unique metabolic versatility and ecological significance, R. erythropolis PR4 exemplifies a remarkable microbe capable of adapting to and thriving in diverse environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus erythropolis
StrainPR4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus erythropolis PR4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Rhodococcus erythropolis PR4 plasmid pREC1, complete sequence.

Gene Summary

Adenine Count

20460 bp

Thymine Count

18003 bp

Guanine Count

32134 bp

Cytosine Count

33417 bp

Genome Length

104014 bp

Protein-coding Genes

109 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinRER_RS30230Not AvailableNegative6084521 - 608514422872.0
hnh endonuclease signature motif containing proteinRER_RS30235Not AvailablePositive6086247 - 608748545006.9
sdr family oxidoreductaseRER_RS30240Not AvailableNegative6087567 - 608845431921.3
aurf n-oxygenase family proteinRER_RS30245Not AvailablePositive6088687 - 608969438232.3
fad-dependent oxidoreductaseRER_RS30250Not AvailablePositive6089728 - 609145562087.7
zn-ribbon domain-containing ob-fold proteinRER_RS30255Not AvailablePositive6091668 - 609214417168.8
lipid-transfer proteinRER_RS30260Not AvailablePositive6092141 - 609333141883.6
alpha/beta hydrolaseRER_RS30265Not AvailableNegative6093362 - 609416827872.3
helix-turn-helix domain-containing proteinRER_RS30270Not AvailablePositive6094337 - 609530835850.7
ankyrin repeat domain-containing proteinRER_RS30275Not AvailableNegative6095269 - 609601825181.3

Displaying genes 5821 – 5830 of 6525 in total

Metabolites

1725 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1725 metabolites

Health Effects

No health effects information available for this bacterium.