Flavobacterium degerlachei

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium degerlachei is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This species is part of the Flavobacteriaceae family, which is characterized by a diverse array of metabolic capabilities and ecological niches. The Gram-negative nature of F. degerlachei indicates a distinctive cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. Flavobacterium degerlachei has been isolated from aquatic environments, suggesting its potential role in the microbial community dynamics of freshwater ecosystems. While the specific ecological roles of F. degerlachei remain to be fully elucidated, its optimal growth at lower temperatures points to its adaptation to cold environments, which may contribute to nutrient cycling and organic matter degradation in such habitats. The presence of this bacterium in cold aquatic systems underscores the importance of understanding microbial diversity and function in these ecosystems, particularly in the context of climate change, where shifts in temperature could impact microbial community composition and activity. Thus, F. degerlachei may serve as a model organism for studying the resilience and adaptability of psychrophilic bacteria in fluctuating environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium degerlachei
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium degerlachei
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium degerlachei strain DSM 15718 genome assembly,

Gene Summary

Adenine Count

1280026 bp

Thymine Count

1263604 bp

Guanine Count

652409 bp

Cytosine Count

659780 bp

Genome Length

3856409 bp

Protein-coding Genes

3347 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-dehydroquinate synthaseSAMN05444338_11660Not AvailablePositive3412536 - 341360640313.5
arginine decarboxylaseSAMN05444338_11661Not AvailablePositive3413895 - 341529554446.9
homospermidine synthase (spermidine-specific)SAMN05444338_11662Not AvailablePositive3415384 - 341635536647.0
hypothetical proteinSAMN05444338_11663Not AvailablePositive3416365 - 341676915523.3
atp-dependent dna helicase recqSAMN05444338_11664Not AvailablePositive3416878 - 341899279404.9
g/u mismatch-specific uracil-dna glycosylaseSAMN05444338_11665Not AvailablePositive3419002 - 341947818557.3
dinb superfamily proteinSAMN05444338_11666Not AvailableNegative3419480 - 341999519979.9
phosphoenolpyruvate carboxylase, type 1SAMN05444338_11667Not AvailableNegative3420007 - 342259298680.1
lrp/asnc family transcriptional regulator, regulator for asna, asnc and gidaSAMN05444338_11668Not AvailableNegative3422692 - 342317118187.4
zinc carboxypeptidaseSAMN05444338_11669Not AvailableNegative3423249 - 342440344120.2

Displaying genes 3001 – 3010 of 3411 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.