Flavobacterium degerlachei

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium degerlachei is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This species is part of the Flavobacteriaceae family, which is characterized by a diverse array of metabolic capabilities and ecological niches. The Gram-negative nature of F. degerlachei indicates a distinctive cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. Flavobacterium degerlachei has been isolated from aquatic environments, suggesting its potential role in the microbial community dynamics of freshwater ecosystems. While the specific ecological roles of F. degerlachei remain to be fully elucidated, its optimal growth at lower temperatures points to its adaptation to cold environments, which may contribute to nutrient cycling and organic matter degradation in such habitats. The presence of this bacterium in cold aquatic systems underscores the importance of understanding microbial diversity and function in these ecosystems, particularly in the context of climate change, where shifts in temperature could impact microbial community composition and activity. Thus, F. degerlachei may serve as a model organism for studying the resilience and adaptability of psychrophilic bacteria in fluctuating environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium degerlachei
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium degerlachei
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium degerlachei strain DSM 15718 genome assembly,

Gene Summary

Adenine Count

1280026 bp

Thymine Count

1263604 bp

Guanine Count

652409 bp

Cytosine Count

659780 bp

Genome Length

3856409 bp

Protein-coding Genes

3347 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron complex outermembrane recepter proteinSAMN05444338_11650Not AvailablePositive3398187 - 340035581191.4
outer membrane proteinSAMN05444338_11651Not AvailableNegative3400502 - 340180650318.0
putative abc transport system permease proteinSAMN05444338_11652Not AvailableNegative3401799 - 340421691389.1
putative abc transport system atp-binding proteinSAMN05444338_11653Not AvailableNegative3404230 - 340493425963.5
hlyd family secretion proteinSAMN05444338_11654Not AvailableNegative3404959 - 340619747224.4
dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domainsSAMN05444338_11655Not AvailablePositive3406338 - 340768751371.9
histidine kinase-, dna gyrase b-, and hsp90-like atpaseSAMN05444338_11656Not AvailablePositive3407689 - 340902351972.2
Trna-valNot AvailableNot AvailablePositive3409091 - 3409168Not Available
abc transporter, permease/atp-binding proteinSAMN05444338_11658Not AvailablePositive3409386 - 341117365851.5
l-proline dehydrogenaseSAMN05444338_11659Not AvailableNegative3411277 - 341244644517.1

Displaying genes 2991 – 3000 of 3411 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.