Flavobacterium degerlachei

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium degerlachei is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This species is part of the Flavobacteriaceae family, which is characterized by a diverse array of metabolic capabilities and ecological niches. The Gram-negative nature of F. degerlachei indicates a distinctive cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. Flavobacterium degerlachei has been isolated from aquatic environments, suggesting its potential role in the microbial community dynamics of freshwater ecosystems. While the specific ecological roles of F. degerlachei remain to be fully elucidated, its optimal growth at lower temperatures points to its adaptation to cold environments, which may contribute to nutrient cycling and organic matter degradation in such habitats. The presence of this bacterium in cold aquatic systems underscores the importance of understanding microbial diversity and function in these ecosystems, particularly in the context of climate change, where shifts in temperature could impact microbial community composition and activity. Thus, F. degerlachei may serve as a model organism for studying the resilience and adaptability of psychrophilic bacteria in fluctuating environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium degerlachei
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium degerlachei
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium degerlachei strain DSM 15718 genome assembly,

Gene Summary

Adenine Count

1280026 bp

Thymine Count

1263604 bp

Guanine Count

652409 bp

Cytosine Count

659780 bp

Genome Length

3856409 bp

Protein-coding Genes

3347 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains)SAMN05444338_11219Not AvailablePositive2846680 - 2849883122567.0
2-amino-3-ketobutyrate coenzyme a ligaseSAMN05444338_11220Not AvailablePositive2850037 - 285123043437.4
thrombospondin type 3 repeat-containing proteinSAMN05444338_11221Not AvailablePositive2851364 - 285279751003.0
pd-(d/e)xk nuclease superfamily proteinSAMN05444338_11222Not AvailablePositive2852861 - 2855623105768.0
pimeloyl-acp methyl ester carboxylesteraseSAMN05444338_11223Not AvailableNegative2855671 - 285645329337.6
bacteriophage abortive infection abihSAMN05444338_11224Not AvailablePositive2856630 - 285786549148.5
tigr00266 family proteinSAMN05444338_11225Not AvailableNegative2857924 - 285872428790.7
xaa-pro aminopeptidaseSAMN05444338_11227Not AvailableNegative2859168 - 286046049608.2
malate synthaseSAMN05444338_11228Not AvailableNegative2860758 - 286235961043.9
hypothetical proteinSAMN05444338_11229Not AvailablePositive2862477 - 286395857047.0

Displaying genes 2511 – 2520 of 3411 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.