Flavobacterium degerlachei

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium degerlachei is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This species is part of the Flavobacteriaceae family, which is characterized by a diverse array of metabolic capabilities and ecological niches. The Gram-negative nature of F. degerlachei indicates a distinctive cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. Flavobacterium degerlachei has been isolated from aquatic environments, suggesting its potential role in the microbial community dynamics of freshwater ecosystems. While the specific ecological roles of F. degerlachei remain to be fully elucidated, its optimal growth at lower temperatures points to its adaptation to cold environments, which may contribute to nutrient cycling and organic matter degradation in such habitats. The presence of this bacterium in cold aquatic systems underscores the importance of understanding microbial diversity and function in these ecosystems, particularly in the context of climate change, where shifts in temperature could impact microbial community composition and activity. Thus, F. degerlachei may serve as a model organism for studying the resilience and adaptability of psychrophilic bacteria in fluctuating environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium degerlachei
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium degerlachei
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium degerlachei strain DSM 15718 genome assembly,

Gene Summary

Adenine Count

1280026 bp

Thymine Count

1263604 bp

Guanine Count

652409 bp

Cytosine Count

659780 bp

Genome Length

3856409 bp

Protein-coding Genes

3347 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
octaprenyl-diphosphate synthaseSAMN05444338_10974Not AvailableNegative2393591 - 239452635701.7
23s rrna m(2)a-2503 methyltransferaseSAMN05444338_10975Not AvailableNegative2394771 - 239581439311.5
predicted o-methyltransferase yrrmSAMN05444338_10976Not AvailablePositive2395896 - 239653724391.8
undecaprenyl-diphosphataseSAMN05444338_10978Not AvailableNegative2396721 - 239728422057.4
sec-independent protein translocase protein tataSAMN05444338_10979Not AvailableNegative2397284 - 239761011650.2
hypothetical proteinSAMN05444338_10980Not AvailableNegative2397717 - 239995785305.7
hypothetical proteinSAMN05444338_10981Not AvailableNegative2400019 - 240052219419.8
hypothetical proteinSAMN05444338_10982Not AvailableNegative2400519 - 240127428967.3
hypothetical proteinSAMN05444338_10983Not AvailableNegative2401264 - 240198927785.9
hypothetical proteinSAMN05444338_10984Not AvailableNegative2401976 - 240274628698.0

Displaying genes 2091 – 2100 of 3411 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.