Flavobacterium degerlachei

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium degerlachei is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This species is part of the Flavobacteriaceae family, which is characterized by a diverse array of metabolic capabilities and ecological niches. The Gram-negative nature of F. degerlachei indicates a distinctive cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. Flavobacterium degerlachei has been isolated from aquatic environments, suggesting its potential role in the microbial community dynamics of freshwater ecosystems. While the specific ecological roles of F. degerlachei remain to be fully elucidated, its optimal growth at lower temperatures points to its adaptation to cold environments, which may contribute to nutrient cycling and organic matter degradation in such habitats. The presence of this bacterium in cold aquatic systems underscores the importance of understanding microbial diversity and function in these ecosystems, particularly in the context of climate change, where shifts in temperature could impact microbial community composition and activity. Thus, F. degerlachei may serve as a model organism for studying the resilience and adaptability of psychrophilic bacteria in fluctuating environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium degerlachei
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium degerlachei
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium degerlachei strain DSM 15718 genome assembly,

Gene Summary

Adenine Count

1280026 bp

Thymine Count

1263604 bp

Guanine Count

652409 bp

Cytosine Count

659780 bp

Genome Length

3856409 bp

Protein-coding Genes

3347 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide/nickel transport system permease proteinSAMN05444338_106103Not AvailableNegative1765936 - 176704240380.2
carboxyl-terminal processing proteaseSAMN05444338_106104Not AvailableNegative1767059 - 176931185114.2
5'-nucleotidase /3'-nucleotidase /exopolyphosphataseSAMN05444338_106105Not AvailablePositive1769516 - 177029528695.5
hypothetical proteinSAMN05444338_106106Not AvailablePositive1770288 - 17705609927.96
lipid-a-disaccharide synthaseSAMN05444338_106107Not AvailablePositive1770645 - 177175742474.9
nlpc/p60 family proteinSAMN05444338_106108Not AvailablePositive1771795 - 177231319078.7
competence protein comecSAMN05444338_106109Not AvailablePositive1772357 - 177439377734.6
protein disulfide-isomeraseSAMN05444338_106110Not AvailableNegative1774400 - 177486117159.9
proton-dependent oligopeptide transporter, pot familySAMN05444338_106111Not AvailableNegative1774907 - 177645456899.6
proton-dependent oligopeptide transporter, pot familySAMN05444338_106112Not AvailableNegative1776482 - 177799655449.4

Displaying genes 1561 – 1570 of 3411 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.