Amycolatopsis japonica str. MG417-CF17 (=DSM 44213)

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Pseudonocardiales
Family	Pseudonocardiaceae
Genus	Amycolatopsis
Species	Amycolatopsis japonica
Strain	MG417-CF17 (=DSM 44213)

Profile

Physiology
Gram staining properties	Not Available
Shape	Not Available
Mobility	Not Available
Flagellar presence	Yes
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	29
Temperature range	mesophilic
Habitat	Not Available
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Amycolatopsis japonica strain DSM 44213 chromosome, complete

NZ_CP008953.1 NZ_CP008954.1

Gene Summary

Adenine Count

1391836 bp

Thymine Count

1395851 bp

Guanine Count

3084848 bp

Cytosine Count

3088783 bp

Genome Length

8961318 bp

Protein-coding Genes

8377 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
duf1003 domain-containing protein	AJAP_RS33830	Not Available	Positive	7370806 - 7371315	19418.3
mrp/nbp35 family atp-binding protein	AJAP_RS33835	Not Available	Positive	7371325 - 7372470	39939.6
sec-independent protein translocase protein tatb	AJAP_RS33840	Not Available	Negative	7372557 - 7372976	14988.8
trypsin-like peptidase domain-containing protein	AJAP_RS33845	Not Available	Negative	7373032 - 7374573	51709.0
hypothetical protein	AJAP_RS33850	Not Available	Positive	7374734 - 7375369	22195.8
anti-sigma factor family protein	AJAP_RS33855	Not Available	Negative	7375379 - 7376074	22957.3
rna polymerase sigma factor sige	AJAP_RS33860	Not Available	Negative	7376071 - 7376691	23256.3
o-methyltransferase	AJAP_RS33865	Not Available	Positive	7376870 - 7377520	22349.8
mfs transporter	AJAP_RS33870	Not Available	Negative	7377543 - 7378778	41320.0
lysr family transcriptional regulator	AJAP_RS33875	Not Available	Positive	7378884 - 7379768	31438.0

Displaying genes 6861 – 6870 of 8608 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8	Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0001717	fumarateC4H2O4	Not available	Average114.0563Da Monoisotopic113.9953086Da
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002963	meso-2,6-diaminoheptanedioateC7H14N2O4	`922-54-3`	Average190.1971Da Monoisotopic190.0953569Da
BASm0003187	N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7	Not available	Average288.257Da Monoisotopic288.096848Da
BASm0003285	5-methyltetrahydropteroyltri-L-glutamateC30H35N9O12	Not available	Average713.663Da Monoisotopic713.2427119Da
BASm0003389	NADP(+)C21H25N7O17P3	Not available	Average740.386Da Monoisotopic740.053624107Da
BASm0003423	7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10P	Not available	Average285.122Da Monoisotopic285.0028043Da
BASm0003456	1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2	Not available	Average573.2993Da Monoisotopic573.0509381Da
BASm0003525	5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2	Not available	Average573.303Da Monoisotopic573.0531333Da

Displaying 1–10 of 12 metabolites

Health Effects

No health effects information available for this bacterium.