Amycolatopsis japonica str. MG417-CF17 (=DSM 44213)

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Pseudonocardiales
Family	Pseudonocardiaceae
Genus	Amycolatopsis
Species	Amycolatopsis japonica
Strain	MG417-CF17 (=DSM 44213)

Profile

Physiology
Gram staining properties	Not Available
Shape	Not Available
Mobility	Not Available
Flagellar presence	Yes
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	29
Temperature range	mesophilic
Habitat	Not Available
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Amycolatopsis japonica strain DSM 44213 chromosome, complete

NZ_CP008953.1 NZ_CP008954.1

Gene Summary

Adenine Count

1391836 bp

Thymine Count

1395851 bp

Guanine Count

3084848 bp

Cytosine Count

3088783 bp

Genome Length

8961318 bp

Protein-coding Genes

8377 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
nad(p)-dependent oxidoreductase	AJAP_RS14345	Not Available	Negative	3015725 - 3016549	28948.2
iclr family transcriptional regulator	AJAP_RS14350	Not Available	Negative	3016587 - 3017393	29008.4
sodium:solute symporter family protein	AJAP_RS14355	Not Available	Positive	3017548 - 3019059	54561.6
5-dehydro-4-deoxyglucarate dehydratase	AJAP_RS14360	Not Available	Positive	3019106 - 3020050	32563.1
glucarate dehydratase family protein	AJAP_RS14365	Not Available	Positive	3020053 - 3021309	45145.7
hypothetical protein	AJAP_RS14370	Not Available	Positive	3021314 - 3022459	40641.1
aldehyde dehydrogenase (nadp(+))	AJAP_RS14375	Not Available	Positive	3022474 - 3023934	50414.6
polysaccharide lyase 8 family protein	AJAP_RS14380	Not Available	Positive	3024041 - 3026383	83514.9
epoxide hydrolase family protein	AJAP_RS14385	Not Available	Positive	3026725 - 3027873	42196.5
alpha/beta fold hydrolase	AJAP_RS14390	Not Available	Positive	3027943 - 3028740	27720.6

Displaying genes 2961 – 2970 of 8608 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8	Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0001717	fumarateC4H2O4	Not available	Average114.0563Da Monoisotopic113.9953086Da
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002963	meso-2,6-diaminoheptanedioateC7H14N2O4	`922-54-3`	Average190.1971Da Monoisotopic190.0953569Da
BASm0003187	N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7	Not available	Average288.257Da Monoisotopic288.096848Da
BASm0003285	5-methyltetrahydropteroyltri-L-glutamateC30H35N9O12	Not available	Average713.663Da Monoisotopic713.2427119Da
BASm0003389	NADP(+)C21H25N7O17P3	Not available	Average740.386Da Monoisotopic740.053624107Da
BASm0003423	7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10P	Not available	Average285.122Da Monoisotopic285.0028043Da
BASm0003456	1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2	Not available	Average573.2993Da Monoisotopic573.0509381Da
BASm0003525	5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2	Not available	Average573.303Da Monoisotopic573.0531333Da

Displaying 1–10 of 12 metabolites

Health Effects

No health effects information available for this bacterium.