Pseudomonas syringae pv. syringae B728a

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

This plant pathogen causes disease in a wide range of plants and crops, including bacterial speck on tomatoes. Black specks form on the leaves and fruit, stunting growth. This gram negative pathogen also causes halo blight of beans. It is primarily seed-borne, and can also be spread from plant to plant by rain. Pseudomonas syringae is a model organism in plant pathology.This is a very versatile organism with several important phenotypes that have made it a focus of study and commercial application and a relevant organism for the DOE in the USA to support resarch, as this plant pathogen causes disease in a variety of plant species, severely impacting both food and biomass production.Also strains of P. syringae have been exploited for a variety of industrial purposes of significance to DOE. For example, many strains of this species are active as ice nuclei catalyzing ice formation at temperatures approaching 0 C. For this reason they have been exploited as artificial ice nucleating agents in processes such as those involved in artificial snow production. A major use of the freeze-dried cells of P. syringae used in such an application has been in the creation of artificial ice islands to facilitate offshore oil drilling in cold oceans such as in the arctic. In a similar application there has been interest in using such ice nucleation active bacteria for the production of artificial mountains of ice in the winter for use in summer cooling of large industrial and office buildings. There is also considerable activity in the study of the use of such bacterial ice nuclei in improving the process of freezing of various foods, including frozen emulsified foods such as ice cream to improve both the energy efficiency of the process and quality of the product.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
StrainB728a

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. syringae B728a
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Pseudomonas syringae pv. syringae strain B728a

Gene Summary

Adenine Count

1357034 bp

Thymine Count

1331887 bp

Guanine Count

1891949 bp

Cytosine Count

1937382 bp

Genome Length

6518252 bp

Protein-coding Genes

5783 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iclr family transcriptional regulatorDND47_10570Not AvailableNegative2418904 - 241974630881.3
hypothetical proteinDND47_10575Not AvailablePositive2420602 - 24207997798.17
inorganic phosphate transporterDND47_10580Not AvailablePositive2421007 - 242247952638.7
hypothetical proteinDND47_10585Not AvailableNegative2422702 - 24229027011.84
formyltetrahydrofolate deformylaseDND47_10590Not AvailableNegative2422980 - 242383132472.9
transcriptional regulatorDND47_10595Not AvailablePositive2424190 - 242457014233.0
exodeoxyribonuclease iDND47_10600Not AvailableNegative2424644 - 242607454499.4
rdd family proteinDND47_10610Not AvailablePositive2426255 - 242698026205.3
stage ii sporulation protein mDND47_10615Not AvailablePositive2426977 - 242795736005.0
duf4129 domain-containing proteinDND47_10620Not AvailablePositive2427944 - 242953360066.1

Displaying genes 2081 – 2090 of 11225 in total

Metabolites

1768 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1768 metabolites

Health Effects

Health ConditionRelationReference
Brown spotCausesPMC3597554
Brown spotCausesPMC4783005

Displaying health effects 1 – 2 of 2 in total