Pseudomonas syringae pv. syringae B728a

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

This plant pathogen causes disease in a wide range of plants and crops, including bacterial speck on tomatoes. Black specks form on the leaves and fruit, stunting growth. This gram negative pathogen also causes halo blight of beans. It is primarily seed-borne, and can also be spread from plant to plant by rain. Pseudomonas syringae is a model organism in plant pathology.This is a very versatile organism with several important phenotypes that have made it a focus of study and commercial application and a relevant organism for the DOE in the USA to support resarch, as this plant pathogen causes disease in a variety of plant species, severely impacting both food and biomass production.Also strains of P. syringae have been exploited for a variety of industrial purposes of significance to DOE. For example, many strains of this species are active as ice nuclei catalyzing ice formation at temperatures approaching 0 C. For this reason they have been exploited as artificial ice nucleating agents in processes such as those involved in artificial snow production. A major use of the freeze-dried cells of P. syringae used in such an application has been in the creation of artificial ice islands to facilitate offshore oil drilling in cold oceans such as in the arctic. In a similar application there has been interest in using such ice nucleation active bacteria for the production of artificial mountains of ice in the winter for use in summer cooling of large industrial and office buildings. There is also considerable activity in the study of the use of such bacterial ice nuclei in improving the process of freezing of various foods, including frozen emulsified foods such as ice cream to improve both the energy efficiency of the process and quality of the product.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
StrainB728a

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. syringae B728a
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Pseudomonas syringae pv. syringae B728a, complete sequence.

Gene Summary

Adenine Count

1239828 bp

Thymine Count

1244402 bp

Guanine Count

1802655 bp

Cytosine Count

1806813 bp

Genome Length

6093698 bp

Protein-coding Genes

5112 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive1066594 - 1066606Not Available
Tyrosine-type recombinase/integraseDND47_04145Not AvailableNegative1066701 - 106766636651.1
duf2384 domain-containing proteinDND47_04150Not AvailablePositive1067890 - 106835416919.2
oxidoreductaseDND47_04155Not AvailableNegative1068360 - 106934334423.4
tetr family transcriptional regulatorDND47_04160Not AvailableNegative1069393 - 107005224480.4
nitronate monooxygenaseDND47_04165Not AvailablePositive1070188 - 107126738047.6
molybdate abc transporter substrate-binding proteinDND47_04170Not AvailablePositive1071369 - 107213626966.1
molybdate abc transporter permease subunitDND47_04175Not AvailablePositive1072137 - 107281723939.0
Abc transporterDND47_04180Not AvailablePositive1072821 - 107390940021.6
Putative topoisomerasae i proteinDND47_04185Not AvailablePositive1073999 - 107506940191.4

Displaying genes 1 – 10 of 11225 in total

Metabolites

1977 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1977 metabolites

Health Effects

Health ConditionRelationReference
Brown spotCausesPMC3597554
Brown spotCausesPMC4783005

Displaying health effects 1 – 2 of 2 in total