Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Site-specific recombinase for integration and excision | HMPREF1862_00016 | Not Available | Positive | 11416 - 12666 | 46686.4 |
| Trna-gly; | Not Available | Not Available | Positive | 11607 - 11682 | Not Available |
| Trna-cys; | Not Available | Not Available | Positive | 11721 - 11791 | Not Available |
| Trna-val; | Not Available | Not Available | Positive | 11793 - 11869 | Not Available |
| Site-specific recombinase | HMPREF1862_00017 | Not Available | Positive | 12666 - 14231 | 59600.5 |
| Predicted transcription regulator | HMPREF1862_00018 | Not Available | Positive | 14309 - 14518 | 7904.57 |
| hypothetical protein | HMPREF1862_00001 | Not Available | Negative | 1 - 217 | 7791.22 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 230 - 1757 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2060 - 5134 | Not Available |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 9311 - 9407 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
