Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail associated lysozyme | HMPREF1862_00008 | Not Available | Positive | 5690 - 8350 | 96178.2 |
| Trna-met; | Not Available | Not Available | Positive | 5771 - 5848 | Not Available |
| Hypothetical protein | HMPREF1862_00009 | Not Available | Positive | 8381 - 8818 | 15911.8 |
| hypothetical protein | HMPREF1862_00010 | Not Available | Positive | 8815 - 8982 | 6182.68 |
| Holin family protein | HMPREF1862_00011 | Not Available | Positive | 9114 - 9647 | 18487.6 |
| Trna-ser; | Not Available | Not Available | Positive | 9595 - 9682 | Not Available |
| hypothetical protein | HMPREF1862_00012 | Not Available | Positive | 9644 - 9862 | 8435.4 |
| Endolysin | HMPREF1862_00013 | Not Available | Positive | 9834 - 10649 | 30343.6 |
| hypothetical protein | HMPREF1862_00014 | Not Available | Positive | 10781 - 11188 | 15350.4 |
| hypothetical protein | HMPREF1862_00015 | Not Available | Positive | 11149 - 11385 | 8427.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
