Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00971 | Not Available | Positive | 1045973 - 1046269 | 10834.9 |
| acetyltransferase, gnat family | HMPREF1862_00972 | Not Available | Positive | 1046346 - 1046897 | 19859.0 |
| hypothetical protein | HMPREF1862_00973 | Not Available | Positive | 1046934 - 1047074 | 5001.0 |
| oligopeptide transporter, opt family | HMPREF1862_00974 | Not Available | Negative | 1047081 - 1049024 | 67128.5 |
| hypothetical protein | HMPREF1862_00975 | Not Available | Positive | 1049291 - 1049845 | 20732.3 |
| membrane protein | HMPREF1862_00976 | Not Available | Positive | 1050425 - 1051177 | 25956.4 |
| dna (cytosine-5-)-methyltransferase | HMPREF1862_00977 | Not Available | Positive | 1052103 - 1054229 | 79189.0 |
| type iii restriction enzyme, res subunit | HMPREF1862_00978 | Not Available | Positive | 1054231 - 1056807 | 95841.0 |
| hypothetical protein | HMPREF1862_00979 | Not Available | Positive | 1056988 - 1057155 | 6171.51 |
| monovalent cation/proton antiporter, mnhg/phag subunit | HMPREF1862_00980 | Not Available | Negative | 1057201 - 1057593 | 13953.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
