Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00951 | Not Available | Negative | 1019178 - 1020647 | 51625.3 |
| hypothetical protein | HMPREF1862_00952 | Not Available | Positive | 1021018 - 1022838 | 65535.0 |
| adp-ribosylglycohydrolase | HMPREF1862_00953 | Not Available | Positive | 1022951 - 1024138 | 41803.9 |
| polysaccharide deacetylase | HMPREF1862_00954 | Not Available | Negative | 1024200 - 1024826 | 23027.7 |
| mta/sah nucleosidase | HMPREF1862_00955 | Not Available | Negative | 1025166 - 1026023 | 29977.4 |
| s-ribosylhomocysteinase luxs | HMPREF1862_00956 | Not Available | Negative | 1026038 - 1026535 | 18708.1 |
| hypothetical protein | HMPREF1862_00957 | Not Available | Negative | 1026865 - 1026990 | 4758.51 |
| glutaredoxin | HMPREF1862_00958 | Not Available | Positive | 1027135 - 1027383 | 8798.52 |
| nrdi protein | HMPREF1862_00959 | Not Available | Positive | 1027528 - 1027941 | 15487.9 |
| ribonucleoside-diphosphate reductase, alpha subunit | HMPREF1862_00960 | Not Available | Positive | 1027926 - 1030082 | 82264.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
