Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein l29 | HMPREF1862_00941 | Not Available | Positive | 1010796 - 1011026 | 8633.3 |
| 30s ribosomal protein s17 | HMPREF1862_00942 | Not Available | Positive | 1011032 - 1011316 | 11155.5 |
| oxidoreductase, nad-binding domain protein | HMPREF1862_00943 | Not Available | Positive | 1011617 - 1012816 | 43376.2 |
| mfs transporter, sp family | HMPREF1862_00944 | Not Available | Positive | 1012848 - 1014500 | 59367.6 |
| hypothetical protein | HMPREF1862_00945 | Not Available | Negative | 1014971 - 1015726 | 26942.5 |
| hypothetical protein | HMPREF1862_00946 | Not Available | Negative | 1015737 - 1015910 | 5854.16 |
| hypothetical protein | HMPREF1862_00947 | Not Available | Positive | 1015963 - 1016106 | 5060.25 |
| groes-like protein | HMPREF1862_00948 | Not Available | Positive | 1016143 - 1017270 | 39393.6 |
| hypothetical protein | HMPREF1862_00949 | Not Available | Negative | 1017761 - 1017931 | 5683.1 |
| eukaryotic phosphomannomutase | HMPREF1862_00950 | Not Available | Positive | 1018430 - 1019188 | 27181.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
